DNA Nanotechnology For More Shapes and Tools

Wired has a feature on the rapidly progressing capabilities with DNA Nanotechnology

Original paper: “Folding DNA into Twisted and Curved Nanoscale Shapes,” by Hendrik Dietz, Shawn M. Douglas, and William M. Shih, published in the August 7, 2009, issue of Science.

The ability to engineer complex shapes to custom specification likely will be as critical in realization of advanced functionality for nanoscale technology as it has been for macroscale technology. We used targeted insertions and deletions of base pairs in DNA double helices bundled as a crystal-like array to implement twisting of either handedness and to induce quantitatively controlled bending with radius of curvature as tight as only six nanometers. We also combined multiple curved elements to build diverse nanostructures such as a wireframe beach ball or square-toothed gears. Our new methods provide access to a rich diversity of shapes on the nanoscale.

The press release from the researcher William Shih and Hendrik Dietz:

Scientists at the Technische Universitaet Muenchen (TUM) and Harvard University have thrown the lid off a new toolbox for building nanoscale structures out of DNA, with complex twisting and curving shapes. In the August 7 issue of the journal Science, they report a series of experiments in which they folded DNA, origami-like, into three dimensional objects including a beachball-shaped wireframe capsule just 50 nanometers in diameter.

“Our goal was to find out whether we could program DNA to assemble into shapes that exhibit custom curvature or twist, with features just a few nanometers wide,” says biophysicist Hendrik Dietz, a professor at the Technische Universitaet Muenchen. Dietz’s collaborators in these experiments were Professor William Shih and Dr. Shawn Douglas of Harvard University. “It worked,” he says, “and we can now build a diversity of three-dimensional nanoscale machine parts, such as round gears or curved tubes or capsules. Assembling those parts into bigger, more complex and functional devices should be possible.”

As a medium for nanoscale engineering, DNA has the dual advantages of being a smart material – not only tough and flexible but also programmable – and being very well characterized by decades of study. Basic tools that Dietz, Douglas, and Shih employ are programmable self-assembly – directing DNA strands to form custom-shaped bundles of cross-linked double helices – and targeted insertions or deletions of base pairs that can give such bundles a desired twist or curve. Right-handed or left-handed twisting can be specified. They report achieving precise, quantitative control of these shapes, with a radius of curvature as tight as 6 nanometers.

The toolbox they have developed includes a graphical software program that helps to translate specific design concepts into the DNA programming required to realize them. Three-dimensional shapes are produced by “tuning” the number, arrangement, and lengths of helices.

In their current paper, the researchers present a wide variety of nanoscale structures and describe in detail how they designed, formed, and verified them. “Many advanced macroscopic machines require curiously shaped parts in order to function,” Dietz says, “and we have the tools to make them. But we currently cannot build something intricate such as an ant’s leg or, much smaller, a ten-nanometer-small chemical plant such as a protein enzyme. We expect many benefits if only we could build super-miniaturized devices on the nanoscale using materials that work robustly in the cells of our bodies – biomolecules such as DNA.”

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